Trajectory simulation

Here, we are simulating branching trajectories and comparing velocity based embedding to other embeddings with all cells and with missing intermediates.

ALL CELLS

## [1] "Done finding neighbors"
## [1] "calculating weights"
## [1] "Done making graph"

PLOTTING

REMOVING INTERMEDIATES

## [1] "Done finding neighbors"
## [1] "calculating weights"
## [1] "Done making graph"

PLOTTING